HsaEX0066792 @ hg38
Exon Skipping
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr9:136898181-136898928:+
Coord C1 exon
chr9:136898181-136898265
Coord A exon
chr9:136898523-136898599
Coord C2 exon
chr9:136898713-136898928
Length
77 bp
Sequences
Splice sites
3' ss Seq
AGCCTGAGTTTCCATACTAGCGG
3' ss Score
1.51
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGCTGGTCTGGCGGCATGGCTCTCTCCTGAGTGCCTTCAGAGCCTGAGTGCCAGCAGGCAGGCGTCTCCTGCCCAGTGGGTTTG
Seq A exon
CGGCGGGAGATGGGACTAGAGGGTCTCCAAGGCTCCCTGAAGCTCTGCGATTCTGCTTCTCTGAGTCTTGACCGCAG
Seq C2 exon
GGCTTTGTTCGCGGGGGTCACAGCTCTCATGGCTGCAGCTAGCGTGACCCCCCCTGGCTCCCTGGAGTTGCTACAGCCCGGCTTCTCCAAGACCCTCCTGGGGACCAAGCTGGAAGCCAAGTACCTGTGCTCCGCCTGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGGCCACCGGTACTGCTCCTTCTGCCTGGCCAGCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191-'22-43,'22-42,23-43
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=46.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCCTTCAGAGCCTGAG
R:
GGTACTTGGCTTCCAGCTTGG
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development