HsaEX0066793 @ hg38
Exon Skipping
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr9:136882667-136898928:+
Coord C1 exon
chr9:136882667-136882741
Coord A exon
chr9:136889670-136889736
Coord C2 exon
chr9:136898713-136898928
Length
67 bp
Sequences
Splice sites
3' ss Seq
GGTCTTGTTATGTTTCCCAGGCT
3' ss Score
5.65
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
GAAGGAGCCCACGTGGGAATCCCCTGAGCTGCGCCATGGCCAGAGTGAGTCACCCCTTTCCAGCCAGCAAACAAG
Seq A exon
GCTGGTCTCGAACTCCTGGCCTGAAGTGATCCTCCAACCTCAGCCTCCCAAGTAGCTGGGATTACAG
Seq C2 exon
GGCTTTGTTCGCGGGGGTCACAGCTCTCATGGCTGCAGCTAGCGTGACCCCCCCTGGCTCCCTGGAGTTGCTACAGCCCGGCTTCTCCAAGACCCTCCTGGGGACCAAGCTGGAAGCCAAGTACCTGTGCTCCGCCTGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGGCCACCGGTACTGCTCCTTCTGCCTGGCCAGCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191_MULTIEX1-1/6=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=46.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGAGTCACCCCTTTCCA
R:
GGAGCACAGGTACTTGGCTTC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development