HsaEX0066843 @ hg38
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]
Coordinates
chr1:211365376-211369592:+
Coord C1 exon
chr1:211365376-211365468
Coord A exon
chr1:211366391-211366490
Coord C2 exon
chr1:211369452-211369592
Length
100 bp
Sequences
Splice sites
3' ss Seq
CATCCATCTTTTCATTCAAGAAA
3' ss Score
5.17
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GATAAACGGAGGAACCTGCAGCAACATGAGCATTCAGCCTTACGGGAGCACATGCGTTTGGTTTTAGAAAAGAATGTCCAATTAGAAGAACAG
Seq A exon
AAACACCTACTGTATGTCAGGTACAATGTTTGCTGCTAGGGACACTGAGCCAAGGAAGATGTAGCCTCTACCCTTGAAGAACTAACATAAATGTAAACAG
Seq C2 exon
ATTTCTGACTTACACAAGAGCCTAGAACAGAAAGAAAGTAAAATCCAGCAGCTAGCAGAAACTATAAAGAAACTTGAAAAGGAGTTCAAGCAGTTTGCACAGTTGTTTGGCAAAAATGGAAGCTTCCTCCCAAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512_MULTIEX1-9/11=8-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(11.5=100),PF0217613=zf-TRAF=PD(13.6=25.8),PF086146=ATG16=FE(40.5=100)
A:
NO
C2:
PF059116=DUF869=FE(17.6=100),PF086146=ATG16=PD(47.3=74.5)
Main Inclusion Isoform:
ENST00000261464fB7276
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAACGGAGGAACCTGCAGC
R:
CTGGATGTTTGGGAGGAAGCT
Band lengths:
234-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development