HsaEX0067001 @ hg38
Exon Skipping
Gene
ENSG00000124496 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr6:42300638-42363079:-
Coord C1 exon
chr6:42362997-42363079
Coord A exon
chr6:42345409-42345457
Coord C2 exon
chr6:42300638-42300749
Length
49 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTTATTTCTCTCAGCAT
3' ss Score
6.99
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCCCTGGCTGTGGAGAATGCTGAAGGAAGAAGACGCAGAAGCAGGACGACCCTGAAAGATTCAGCCTCTTCATCCTCAAACAG
Seq A exon
CATTGCCGGTCTGTGAGTGAAGAAGCTGCACCAGCCTGCTGTTGGGAAG
Seq C2 exon
GACCAGGCCTCCTCTTCCCACCTGTCCAGCAGCATGAAAGCAGCATGATTGGCCGACCGCAGGAGAAGCCCCCAGAACCAGGCCCCCAACTCAGCCATCTGCGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124496_MULTIEX1-5/6=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGGAGAATGCTGAAGG
R:
TCGGCCAATCATGCTGCTTTC
Band lengths:
134-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development