Special

ENSG00000124496 @ hg38

Biotype
protein_coding
Gene Symbol
TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr6:42224931-42452051:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
72.67
53.49
0
Alternative 3'ss
36
chr6:42232893-42232928
-
27.33
53.49
0
Alternative 3'ss
200
chr6:42263366-42263565
-
31.55
62.22
0
Alternative 3'ss
203
chr6:42263366-42263568
-
67.41
63.33
0
Alternative 5'ss
0
NA
-
54.58
69.64
0
Alternative 5'ss
3
chr6:42362994-42362996
-
17.68
64.94
0
Alternative 5'ss
50
chr6:42362947-42362996
-
27.66
79.09
0
Alternative 5'ss
0
NA
-
33.1
40.14
0
Alternative 5'ss
363
chr6:42451519-42451881
-
66.9
40.14
0
Alternative 5'ss
0
NA
-
54.38
93.18
0
Alternative 5'ss
60
chr6:42263260-42263319
-
45.62
93.18
0
Exon Skipping
126
chr6:42249370-42249495
-
7.03
100
0
Exon Skipping
49
chr6:42345409-42345457
-
5.74
17.93
0
Exon Skipping
207
chr6:42236205-42236411
-
95.96
25.42
0
Exon Skipping
249
chr6:42263320-42263568
-
62.91
94.52
0
Exon Skipping
385
chr6:42259339-42259723
-
99.07
12.77
1
Exon Skipping
53
chr6:42451882-42451934
-
44.69
48.94
0
Intron Retention
8306
chr6:42246545-42254850
-
10.67
48.31
0
Intron Retention
3312
chr6:42232893-42236204
-
11.54
40.51
0
Intron Retention
62247
chr6:42300750-42362996
-
20.85
35.47
0
Intron Retention
2356
chr6:42265798-42268153
-
11.21
46.15
0
Intron Retention
3596
chr6:42259724-42263319
-
17.12
80
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000064043 Trerf1 1-to-1
Mouse mm9 ENSMUSG00000064043 Trerf1 1-to-1
Rat rn6 ENSRNOG00000022598 Trerf1 1-to-1
Cow bosTau6 ENSBTAG00000015321 TRERF1 1-to-1
Chicken galGal4 ENSGALG00000009896 TRERF1 1-to-1
Chicken galGal3 ENSGALG00000009896 TRERF1 1-to-1
Zebrafish danRer10 ENSDARG00000088631 TRERF1 1-to-1