Special

ENSMUSG00000064043 @ mm9

Biotype
protein_coding
Gene Symbol
Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47277891-47496407:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
29.93
40.55
0
Alternative 3'ss
3
chr17:47454717-47454719
+
70.07
40.55
0
Alternative 3'ss
0
NA
+
57.3
70.37
0
Alternative 3'ss
36
chr17:47490646-47490681
+
42.7
70.37
0
Alternative 5'ss
0
NA
+
41.31
68.33
0
Alternative 5'ss
60
chr17:47456568-47456627
+
58.69
68.33
0
Alternative 5'ss
0
NA
+
23.7
66
0
Alternative 5'ss
220
chr17:47278134-47278353
+
69.19
61
0
Exon Skipping
53
chr17:47278081-47278133
+
20.9
28.55
0
Exon Skipping
327
chr17:47456301-47456627
+
61.57
93.42
0
Exon Skipping
385
chr17:47460227-47460611
+
100
0
1
Intron Retention
4876
chr17:47485806-47490681
+
24.5
21.8
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000124496 TRERF1 1-to-1
Human hg19 ENSG00000124496 TRERF1 1-to-1
Cow bosTau6 ENSBTAG00000015321 TRERF1 1-to-1
Chicken galGal4 ENSGALG00000009896 TRERF1 1-to-1
Chicken galGal3 ENSGALG00000009896 TRERF1 1-to-1
Zebrafish danRer10 ENSDARG00000088631 TRERF1 1-to-1