MmuEX6078203 @ mm9
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47456301-47461603:+
Coord C1 exon
chr17:47456301-47456627
Coord A exon
chr17:47460227-47460611
Coord C2 exon
chr17:47461537-47461603
Length
385 bp
Sequences
Splice sites
3' ss Seq
AACTGTTCCTCTCACTCTAGGAA
3' ss Score
10.21
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GAGGAAGGAGAGAAGGCCCCACCGCCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCAGCCACTGCCACCTCCGCCTCCTCCGCCGCCGCCACCGCAGCTCCCTCCTGAGGCAGAGCGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTAATCCCACCCAAGCCCAGCTCTCAGGGGTTCACCAACAGCGTCGCTGCCACCCCCGCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCTGTGCTCGTGAGGATGACCCTCTCCCCCCCTCACTCCCCCCAAGGGGCTGCCCCCCGTGCGCCTGCT
Seq A exon
GAAATCCCCCGGAAACATCCACCTATCGCCGCCAAAGTTGAGGAGCCCCTCAAGAACCTACCAGAGAAGAAGAAATTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCGTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCGCGAATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACGCCGCCACCCATGCTGAGCCCTGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGTGTGCTGCTGTGCCGTTCCA
Seq C2 exon
GCAGCATCGATGGCAGCAATGTGACAGTCACCCCAGGACCTGGAGAGCAGACTGTGGATGTTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'19-12,'19-11,21-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.744 C2=0.739
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGGAGAGAAGGCCCC
R:
CTGTCACATTGCTGCCATCGA
Band lengths:
354-739
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003308; ELM sequence: RHRPEPLFI; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: