GgaEX6029352 @ galGal4
Exon Skipping
Gene
ENSGALG00000009896 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr3:22216884-22223014:-
Coord C1 exon
chr3:22222766-22223014
Coord A exon
chr3:22219029-22219398
Coord C2 exon
chr3:22216884-22216944
Length
370 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATGTTTTCATTTAGGAA
3' ss Score
9.66
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GATGAAGGAGAGAAACCACCACAGCAGCCGCTGCCTAAAGAGGTGGATAGCCTCGCGCCCATCGTCATGCCAGTGTCTGTCCCTGTAAAGCTTCTGTCACCCGAACCCAGCACGCAGCCCTCTGCCAGCACTACCACAGTCAAAGACAAGCCTGCCAACTCTATGTCAGATGATGAGATGCCCGTTCTCGTGAAGATGACTTTCTCTCCACCGTGCAGTCCAAAAGTGGCCAACCCCTGCTCATCCTCT
Seq A exon
GAAATTAGCAAAAAACCTCATCCAAATGCTGCAAAATTGGAAGAAAACTTCAAACCATTACCAGACAAGAAGAAGTATCGGCACAGACCTGAACCTCTCTTCATACCTCCTCCTTCCTTCAACTTCAGCACGTCCCACTCTGGTGCCACGCTGTACCAGAGCCAGCTTCGCTCTCCCCGTGTCCTTGGAGACCATTTGCTGGACCGAACACACGAGCTCCCCCCCTACACTCCACCGCCAATGCTTAGTCCTGTTCGGCATGGATCTGGTCTCTTCAGTAGTGTTATCACATCATCTCATAGCACCGCGCACACTCAGCTGCCGCTCACTCCACTGACACCAACTCCACGGGTGCTCCTCTGTCGGTCCA
Seq C2 exon
GTAGCATTGATGGAAGTGTAATTCCAGTGACGCCTGGGCCTGGTGAACAGACTGTTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896-'16-11,'16-9,17-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.715 C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGGAGAGAAACCACCACA
R:
GGTTCAACAGTCTGTTCACCAGG
Band lengths:
310-680
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003308; ELM sequence: RHRPEPLFI; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]