RnoEX0093508 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15689304-15695868:-
Coord C1 exon
chr9:15695718-15695868
Coord A exon
chr9:15690272-15690656
Coord C2 exon
chr9:15689304-15689370
Length
385 bp
Sequences
Splice sites
3' ss Seq
AACTGTTCCTCTCACTCTAGGAA
3' ss Score
10.21
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CGGCCAAACCAAAGGAGTGTTTGGGGAACAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAAAGCCTGCCTGCCCTGAATGGCCACATGAGGTCCCACGGGGGAATGAGGGCATCCCCCAGCCTCAAACAG
Seq A exon
GAAATCCCCCGGAAACATCCGCCCATCACCGCCAAAGTTGAGGAGCCCCTCAAGACCCCACCAGAGAAGAAGAAGTTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCTTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAACTGCGCTCCCCACGCATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACACCGCCACCCATGCTGAGCCCCGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGCGTGCTGCTGTGCCGTTCCA
Seq C2 exon
GCAGCATCGATGGCAGCAATGTGACAGTCACCCCAGGACCCGGAGAACAGACTGTGGATGTTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-'8-11,'8-10,12-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=0.744 C2=0.739
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=47.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAAACCAAAGGAGTGTT
R:
CAACATCCACAGTCTGTTCTCCG
Band lengths:
214-599
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003308; ELM sequence: RHRPEPLFI; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]