RnoALTD0031832-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15690272-15694106:-
Coord C1 exon
chr9:15693996-15694106
Coord A exon
NA
Coord C2 exon
chr9:15690272-15690656
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGG
5' ss Score
3.7
3' ss Seq
AACTGTTCCTCTCACTCTAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
CTTCTCCCACCCAAGCCCAGCTCTCAGGGGTTCACCAACAGCGTCGCTGCCACCCCTTCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCTGTGCTC
Seq A exon
NA
Seq C2 exon
GAAATCCCCCGGAAACATCCGCCCATCACCGCCAAAGTTGAGGAGCCCCTCAAGACCCCACCAGAGAAGAAGAAGTTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCTTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAACTGCGCTCCCCACGCATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACACCGCCACCCATGCTGAGCCCCGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGCGTGCTGCTGTGCCGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-9-10,10-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGGGGTTCACCAACAG
R:
TCCTCAACTTTGGCGGTGATG
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]