RnoINT0155642 @ rn6
Intron Retention
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15690272-15695868:-
Coord C1 exon
chr9:15695718-15695868
Coord A exon
chr9:15690657-15695717
Coord C2 exon
chr9:15690272-15690656
Length
5061 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
AACTGTTCCTCTCACTCTAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
CGGCCAAACCAAAGGAGTGTTTGGGGAACAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAAAGCCTGCCTGCCCTGAATGGCCACATGAGGTCCCACGGGGGAATGAGGGCATCCCCCAGCCTCAAACAG
Seq A exon
GTCAGCAGGGTCCCACCCCGTCCTTTACAGGTCATGTGCTGCTTGCTTTGCTTCGCCGCTCTTGGAGTGAGACAGGGGGATGGATGTGTGCCTTTCGTGGGTGCCAGGAGAGGCAGTCTCCACTTCCCTGGCTTCTTAGACAAGTGTCAAAAGAGGAATGCTAGAAATCCTGTAGGAATCCTGTCTCTTTTCCTAGAGAAAGGTACCAAGGAACTCTGTCAGTGTGAGATCTATAAATATGCAAATGCAGACTGCATACATATGCAAATGTGTAGTTGAAATCTGACGTCACTGGAAGCACTGAAGACCATAACCAATGGCCTCTGACATCAGTGGTCAGGGACTAAGGAAAAGCATGTAATTCCCAAGCTCTCGGCCAGAATTTTCTGTTCATTCGTGCAGTGGTGATTGGCTGTAGGTAGGATCCAGTGATCCCCTCAGGATGATCCAGGAGGACAGTCATGTAAGAAACCACCTTTGGGTTCGGGTCAAACTCAGAGAATATTCCGAAAATATTGAATTTTGAGATTTACTCTCCCGTCTCTATTTCCTGGCTGTGCCACACACATAAAAGTGGAGTTTGTGTTCACTGTTTTACTTGATGTGCATTGGTGTTCTGCCTGGATGCATGTCTATGTGAGGGTGTCAGATCTCTTGGAGCTGGATAACAGAGTTGTGAGTTGCCACGAGGGAGCTGGGAATTGAACTCAGATCCTCTGGACGAGTAGCCTGTGCTTTTAACCATCCCTCCAGCCTGTCTTCACATTTTAAAAATATGTTGCCAGGTGGTCCGTGGCTCATGCCTCTCTAATCCCAGTGCTCAGGGGGTAGAGACAGGGGGATCACTGGAAGTTGAGGCTAGCCTGGTTTACACGGCAAGTTCAAGGCTAGCCAAAGCAACATAGCAATATCCTTGTCTGAAAACACAGAGAAGAGAAGGTATGTGTTCAGCCTGGTGTGGCATTACGCACCTGAAATCCCGGCACTCAGGAGGCTGAGGCAGGAGGATTCTGAGTTTGGGTCACCTATTGAGAACCTGTCTTAAAGAAACAAACACAGCCACAGCACAGTCTGCGTTCTCCACGTGGTTTCCTAACCCGAATAAAATGTAGGCTACACTGATTGTTTCCTTAAGACACTGAGGCAACTGGGACCCAAGGAGTGAAAATCTCCTACCTAAGATCTCACGTTTAGTTTTGACTGAATAGCAGTCCCTGTCCTTTATTTCAAAAAGCCATGAAAGCCACCAACTTTCTTTTTTTTTTTTAATATTTTCATATACAAGCGATATCTTACGTGCAGCTCAGGGACCCAGAGTTACAGGAAGGAAACCGCCCAGCTGTGGTTTTCTGTTCCCCTCCACTGATGTCCTGGAACCTCTGAGGAAAAGCAAGTCCATCCCCCCTTAGGAGAACTGCTTTCAGCCCAGGATCAAACCCTTTATTGTCTGTGTAGGAGGAAGGAGAGAAGGTCCCACCGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCCCAGCCGCCACTGCCGCCTCAGCCGCCACCGCAGCTCCCTCCTGAGGCAGAGCGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTTCTCCCACCCAAGCCCAGCTCTCAGGGGTTCACCAACAGCGTCGCTGCCACCCCTTCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCTGTGCTCGTGAGGATGACCCTCTCCCCCCCTCACTCTCCCCAAGGGGCTGCCCCCCGTGCGCCTGCTGTGAGTTGCTGCACTGCCACACCTGCCTGGGGTGGGGACATTGCTTTGCTTTCTTGGAGATGAGGACAGCTTTTCCAGAATCACTGCCCTGAGCTACTTGAGGTTCAAGCGTTCTAGGGCCACCCTGCCACTTGACCAACCTGTCCCATACTCGTTACTCCTCCAGGCTGATGGTCTGGGTCCAGTTCTGAAAACTGACGTGTTCTCACGCCTAAGCACCTCAATGACAATTCAGTTGGCAGGCATCAATGTAACCTTGCCAGTCACTAAGAGAGGAAAAACATCTCTGCTAATAAACAAACCGTTTCCCTGCCCTGGATCTTTCCCAAGACCTCTGGCTCTCCCAGACCCAACTGCCAAAGAGGTAAACCTCGGAATGGCTGCACCTCTGGAAAGTGTCTGAGTCACCAGCTTAGATGATCTGCATCGCCAATGCCTACAATCATCACACCCTCTTTAATCCCTGGGGTCTCAGATCCATTACCGTTCCCGAAATGAGCCCAGTGAGAGCCAGACCCCACAAGTCTCAGGAAAGCAAAGCGATTCATGTTTCTCAGTCCCTGTTAAATTCTCCTTGCCTTCTTCACCCCTCCTCTCCTCTCTGCCTCTTCTCTCTACCCTGGGGAAATAATGACCTCCATGGTTGGCCATACCAGACCTGTCTCATCCTGTAGAGTAGTGTCTTGGATCTTAAATGTCCTGAAAGAATGGGTGGATTCTGGGAGCCGTAAGGGTAGGGTTGAAACATTCAGAAAAAGAACTGCTTTGGGTTTTTGTGTGACATTGAGGTTCAGAAGAAGAGAGGCTGAGGGACCACCTCCATATTCTGGTGAGAGGGGACCAGCAAAACACACACACACACACACACACACACACACACACACACACACACACACACCTTGCCTGAGGAAGTTGTATGGTAGGTGCGAGAGGCTCTGCGTCTATCCTGGAAGCCACACAGGGATTATAACACCCATCTCATTCAAGACAGTGAGAAGAAGAAGGGCTAGGGAGAAACCTATTTCCTGGAGGTGGTAAGATGGAAAGACAGGTGTCTTCTGCCAAAATGGCTCCTCTTACAAGTTTTCGATTTTACATACAAGTGAAAGTTCTATTTTGGGTTTTGGATCTTGACCTTCTCCAAGGCTAGTGAGGAACGCACACACGATGCTCCCAGTGAGCTACTAGATCCTGAGGGGAAAGACCGTCTGCCCTCAGTTGCAGGGGTAGGGATGCTCTGTGAGCGGGGTGTATTAACTGCATTTTAAACTTAATTGCTTTGCTTTAGTTATTCAGATTATACGTCCATCATAAATCTGGGTGCACCAGTATACCAGGTCCAGCTAGCAAGGCAGTGTGGTTGTATTTTTTTATTTAGGATGATTAAGAGAGTTCTGAGTAGGCTGAATAGGAAGGGGTGAACCTGGTTTAATGCGGGGGTGGGGGGAGACCAAGACCATCCAGCTGACAGCGGGCAGGCTGAATCAGAAGCATGCTCAGGAGTAAAGAGTGAAAATCAAGCTCTTGGTACAAAAACAAGTTTAAAATCCAGGAAAGAGCTCTAAATTCAAATCTCAGCTCTGGCATAAAGCCAACTTGAAATGTCCCTCTCAGTCTCCATTTCCCCCAGACTTACCAGTAGCCTTCTCCCTCTCCTGGGGACAGGAGTTTTATATTCAGTGTTTGGCTCTGTCCCCTAGAGTCCATAGTTGAAACACTTCAGATGTGACCTAAGTGTGATAGTCTGAGTGTTTTGACATTCTGAGTTGGGCCTCTGGTCCAGGTAACTCAGAGAGCCTTGCCTGGGACATAATAAAGCATTATTTAGAGGTGGAGGCACCAAAAGAGCCTAAAGGGGACTTTTGAAATCTACATTTAGGATCCTGGGCAGAGTTGAGGTCACCAAGAACTCCACATTACTTAAATGACCTCCTCAGTGACCCAAGGACCGGACTTAAAGGGTTTCAGATTTGCTCCACAGTCAGGCCTAGGGATGGCAACGTCGCATTTTTGAAACACTCTCAGCAGCCTCTTGGCTCCTCGGGGTCTCTTCTGGGCCTTGGCTGTGAGGCTGGAGGGCACTGGTCCACGGAGACCCACCTTAGCGCTCCCTCGGCAACTTCCACGCTGATGCCGGGAGCCCCTCTCCCCCTCCTCCTTCATTTCTATCTCCCCAAGAGCCTCTCCTAGAGGCTGGGATGGCACCTCGGAAGTCAAGGGAGCTGAGGAAGAAGTAGACAGCGGGAGGGGAGAGGCAGAGCCCACACAACTGAAGGCAGGCCGGTGAGAGGGGCCCAAAGCTGAAGGGAGCTGGGAGAGGTCACATGGCCTGGAGGCAGCTGGTCATGTGACCATGAAAGTCTTTCCCATCACCCCTTGCTGCTGTCTTCACTCGCCACTCTGGCACTAGAGCTGCTGGGCACTGCAGCTGTGCCTGAGCACCTCAGAGCCTCTCCACAGGTATCCCGGCTGGCTGTCACACCCAGCTCTCGGCTTTTCTGGGTTGATGCTGGCCCCCGACCCAAGTCTGTTTCGTCCGGCTTTGGCATACCCTGCTTCTCTATTTGACGTGCATGTGTGGACTTACTAGTATATGTGTCTCCGTGTGGCAGGTCCCCCAGACGAGGCTGGGTTACCCGCCATAACCTAAACTAGCACTGCTGACAGGAAGCAGGAGGAGCTAGGGTTGCTACAGAGGAGCCTCAGAGGGGCGTGACAGGGGGGCGTCACCAGCTCCATCTCCAGGAGAGCCCGTTAAAACGGCCTTGAGGATTGTGGGCCACTGTGCCCCGGCCTCAAGTAACCCTGTAGAGCCGTGGTGACAGCTCCGGGAACCTGCGCTAGTCACGAAGCTCTTCCTGCCCCTCAGCCTTGGGCCTTGCATCCCTGAAGAGAGGATTCTGACCCCTGCTTAGAACATGTGTGATCTATCCCTGCAGGAGCAGTGGGGGAGCTAAAGAGCCACTCTGCTGGATTCCACTCAAGACAGATGGAAATGCAGTGATAAGCCAGAGTTTTAATTTATTACTTCTTGCGGCCCCACCCTACCCTTCACAGACCTTCCGGATTTTCTTTGCTAACGAGCCCAAGGCCGATGTGGTGGGAGTGGGAGGGGACGAACAGAAGGGAGGCAGTCTCTCCCCCACCCCCTTAGAATTTTCGAGATCCCTGGCCAAATCTATGGAAAGGGACCAAGGCAAGGATAGCAGTTCTGTACTTAGAAAGGGGACAATGGCTGGGGTGCCCTAGTTTGAATCCCAACTGTTCCTCTCACTCTAG
Seq C2 exon
GAAATCCCCCGGAAACATCCGCCCATCACCGCCAAAGTTGAGGAGCCCCTCAAGACCCCACCAGAGAAGAAGAAGTTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCTTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAACTGCGCTCCCCACGCATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACACCGCCACCCATGCTGAGCCCCGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGCGTGCTGCTGTGCCGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598:ENSRNOT00000035907:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=NA C2=0.744
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=47.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]