RnoEX0093509 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15690272-15695868:-
Coord C1 exon
chr9:15695718-15695868
Coord A exon
chr9:15693936-15694262
Coord C2 exon
chr9:15690272-15690656
Length
327 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTATTGTCTGTGTAGGAG
3' ss Score
8.41
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CGGCCAAACCAAAGGAGTGTTTGGGGAACAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAAAGCCTGCCTGCCCTGAATGGCCACATGAGGTCCCACGGGGGAATGAGGGCATCCCCCAGCCTCAAACAG
Seq A exon
GAGGAAGGAGAGAAGGTCCCACCGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCCCAGCCGCCACTGCCGCCTCAGCCGCCACCGCAGCTCCCTCCTGAGGCAGAGCGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTTCTCCCACCCAAGCCCAGCTCTCAGGGGTTCACCAACAGCGTCGCTGCCACCCCTTCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCTGTGCTCGTGAGGATGACCCTCTCCCCCCCTCACTCTCCCCAAGGGGCTGCCCCCCGTGCGCCTGCT
Seq C2 exon
GAAATCCCCCGGAAACATCCGCCCATCACCGCCAAAGTTGAGGAGCCCCTCAAGACCCCACCAGAGAAGAAGAAGTTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCTTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAACTGCGCTCCCCACGCATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACACCGCCACCCATGCTGAGCCCCGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGCGTGCTGCTGTGCCGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=1.000 C2=0.744
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=47.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGGCCACATGAGGTCC
R:
GAGGACATTGCTGAAGAGCCC
Band lengths:
357-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]