DreEX6052546 @ danRer10
Exon Skipping
Gene
ENSDARG00000088631 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr17:6075826-6088796:+
Coord C1 exon
chr17:6075826-6075973
Coord A exon
chr17:6085068-6085256
Coord C2 exon
chr17:6088511-6088796
Length
189 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTTTTAACAGAGA
3' ss Score
9.26
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
AGCAGACGCAGGCCTGTCGAGAGATGAGGGATCATATGCCAAGATGAAATGCACTGTTTGTCTGAGGGAGTTTAAGAGTCTTCCAGCTCTGAACGGACACATGCGCTCACATGGAGGCCTGCGAACACACCCTGCCAACCTCAAAATG
Seq A exon
AGAGACGGGCAAATGAATATGTGTGCTGAAGTTCCTCAGGGGAACCCCATCATCTTACCCGTTTCAGTCCCAGTCAAGAATTACCAAACCCAGACCAAACTCACACTCCTGTGCCAGCAGAAAGATGATGGTTTAATAAAGTCTTGTGCGCAGACCCCCCTCCCACCGCTCCGAAACCACCCTTCCTGT
Seq C2 exon
ATAAAGAGATCCAACTCAGAGGGAGAGTCTGCACCAAAGCAAGTGAAGAAGAAATACCGCCACTGTCTGGTGCCGCTGATGATTCCTTCACCCAGCGACGGTCAGGAATCTCGAGGCGCTGTGCTCTTCCGCAGTCAGCTGAGGACGGCCAGCAGCATGTCTGACGACGCACCGTACACCCCTCCGCCAATGCTCAGCCCCGCACGCCCTGGGTCAGGCCTCTTCAGTGCAGTCAGCGGCCGGGCAAACATCCAATCTACTCCAGAAAGACTGCTCTCCAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088631-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.520 A=0.349 C2=0.802
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=48.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCCTGCCAACCTCAAAA
R:
GACTGCACTGAAGAGGCCTGA
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]