BtaEX0037633 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15979068-15984368:-
Coord C1 exon
chr23:15984215-15984368
Coord A exon
chr23:15982902-15983147
Coord C2 exon
chr23:15979068-15979455
Length
246 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTATTGTCTGTGTAGGAG
3' ss Score
6.4
5' ss Seq
CTCGTGAGG
5' ss Score
3.7
Exon sequences
Seq C1 exon
CAGTGGCCAACCCAAAGGAGTGTTTGGGGAGCAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAGAGCCTGCCCGCCCTGAATGGCCACATGCGGTCCCATGGGGGGATGAGGGCCTCCCCCAGCCTCAAACAG
Seq A exon
GAGGAAGGAGAGAAGGCCCCGGCGCCTCCGCCTCAGCCCCAGCCGCCACTGCCGCCTCCGCCGCCGCCACCTCAGCTCCCTCCCGAGGCGGAAAGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTTCTCCCGCCCAAGCCCAGCTCTCAGGGCTTCGCCAACAGCGTCGCTGCCGCCCCCTCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCCGTGCTC
Seq C2 exon
GAAATTCCCAAGAAGCACCAGCCAGGCGCGGCCAAAGCCGAGGAAGCCCTCAGGAGCGCGCCAGCAGAGAAGAAGAAGTTCCGGCACCGGCCGGAGCCGCTCTTCATCCCGCCACCGCCCTCCTACACGCCCAACCTCGCCGCCTCGCACTCGGGCGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCACGGGTGCTGGGCGACCACCTGCTCCTGGACCCCGCCCACGAGCTGCCCCCCTACACGCCCCCGCCCATGCTCAGCCCGGTGCGCCAGGGCTCGGGGCTCTTCAGCAACGTGCTCATCGCCGGCCACGGCCCCGGCGCCCACCCGCAGCTGCCCCTCACGCCCCTGACGCCCACGCCGCGCGTGCTGCTCTGCCGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=1.000 C2=0.815
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=46.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGTTCAAGAGCCTGCC
R:
GGTCCAGGAGCAGGTGGTC
Band lengths:
302-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development