BtaEX6097546 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15977972-15983147:-
Coord C1 exon
chr23:15982842-15983147
Coord A exon
chr23:15979068-15979455
Coord C2 exon
chr23:15977972-15978038
Length
388 bp
Sequences
Splice sites
3' ss Seq
GGATCGTTCTTCCGTCGTAGGAA
3' ss Score
7.45
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GAGGAAGGAGAGAAGGCCCCGGCGCCTCCGCCTCAGCCCCAGCCGCCACTGCCGCCTCCGCCGCCGCCACCTCAGCTCCCTCCCGAGGCGGAAAGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTTCTCCCGCCCAAGCCCAGCTCTCAGGGCTTCGCCAACAGCGTCGCTGCCGCCCCCTCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCCGTGCTCGTGAGGATGACCCTCTCTCCCCCACACTCGCCCCAAGGGGCTGCCCCCAACCCGCCTGCT
Seq A exon
GAAATTCCCAAGAAGCACCAGCCAGGCGCGGCCAAAGCCGAGGAAGCCCTCAGGAGCGCGCCAGCAGAGAAGAAGAAGTTCCGGCACCGGCCGGAGCCGCTCTTCATCCCGCCACCGCCCTCCTACACGCCCAACCTCGCCGCCTCGCACTCGGGCGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCACGGGTGCTGGGCGACCACCTGCTCCTGGACCCCGCCCACGAGCTGCCCCCCTACACGCCCCCGCCCATGCTCAGCCCGGTGCGCCAGGGCTCGGGGCTCTTCAGCAACGTGCTCATCGCCGGCCACGGCCCCGGCGCCCACCCGCAGCTGCCCCTCACGCCCCTGACGCCCACGCCGCGCGTGCTGCTCTGCCGCTCCA
Seq C2 exon
ACAGCATCGATGGCAGCAACCTGACGGTCACCCCGGGGCCTGGAGAGCAGACCGTTGATGTCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321-'5-6,'5-5,7-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.815 C2=0.739
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGGAGAGAAGGCCCC
R:
GTCTGCTCTCCAGGCCCC
Band lengths:
358-746
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003308; ELM sequence: RHRPEPLFI; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]