BtaALTD0022734-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15979068-15983012:-
Coord C1 exon
chr23:15982902-15983012
Coord A exon
NA
Coord C2 exon
chr23:15979068-15979455
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGG
5' ss Score
3.7
3' ss Seq
GGATCGTTCTTCCGTCGTAGGAA
3' ss Score
7.45
Exon sequences
Seq C1 exon
CTTCTCCCGCCCAAGCCCAGCTCTCAGGGCTTCGCCAACAGCGTCGCTGCCGCCCCCTCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCCGTGCTC
Seq A exon
NA
Seq C2 exon
GAAATTCCCAAGAAGCACCAGCCAGGCGCGGCCAAAGCCGAGGAAGCCCTCAGGAGCGCGCCAGCAGAGAAGAAGAAGTTCCGGCACCGGCCGGAGCCGCTCTTCATCCCGCCACCGCCCTCCTACACGCCCAACCTCGCCGCCTCGCACTCGGGCGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCACGGGTGCTGGGCGACCACCTGCTCCTGGACCCCGCCCACGAGCTGCCCCCCTACACGCCCCCGCCCATGCTCAGCCCGGTGCGCCAGGGCTCGGGGCTCTTCAGCAACGTGCTCATCGCCGGCCACGGCCCCGGCGCCCACCCGCAGCTGCCCCTCACGCCCCTGACGCCCACGCCGCGCGTGCTGCTCTGCCGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321-4-5,5-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGACAAGCCAGCCAGC
R:
CGGTGCCGGAACTTCTTCTTC
Band lengths:
138-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development