Special

ENSMUSG00000064043 @ mm10

Biotype
processed_transcript
Gene Symbol
Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47140875-47361958:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
29.93
40.32
0
Alternative 3'ss
3
chr17:47317768-47317770
+
69.94
40.32
0
Alternative 3'ss
0
NA
+
57.39
70.37
0
Alternative 3'ss
36
chr17:47353697-47353732
+
42.61
70.37
0
Alternative 5'ss
0
NA
+
42.12
68.33
0
Alternative 5'ss
60
chr17:47319619-47319678
+
57.88
68.33
0
Exon Skipping
273
chr17:47141132-47141404
+
50.39
53.62
0
Exon Skipping
327
chr17:47319352-47319678
+
59.07
100
0
Exon Skipping
385
chr17:47323278-47323662
+
100
0
1
Intron Retention
1430
chr17:47317922-47319351
+
7.12
30
0
Intron Retention
2068
chr17:47324655-47326722
+
3.34
55.56
0
Intron Retention
138
chr17:47326863-47327000
+
4.01
55.81
0
Intron Retention
166
chr17:47140966-47141131
+
9.61
20.71
0
Intron Retention
4876
chr17:47348857-47353732
+
32.5
57.04
0
Intron Retention
639
chr17:47141185-47141823
+
21.89
65.11
0
Intron Retention
3599
chr17:47319679-47323277
+
9.98
43.33
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000124496 TRERF1 1-to-1
Human hg19 ENSG00000124496 TRERF1 1-to-1
Cow bosTau6 ENSBTAG00000015321 TRERF1 1-to-1
Chicken galGal3 ENSGALG00000009896 TRERF1 1-to-1