MmuALTD0014762-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47319352-47323662:+
Coord C1 exon
chr17:47319352-47319618
Coord A exon
chr17:47319619-47319678
Coord C2 exon
chr17:47323278-47323662
Length
60 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AACTGTTCCTCTCACTCTAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
GAGGAAGGAGAGAAGGCCCCACCGCCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCAGCCACTGCCACCTCCGCCTCCTCCGCCGCCGCCACCGCAGCTCCCTCCTGAGGCAGAGCGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTAATCCCACCCAAGCCCAGCTCTCAGGGGTTCACCAACAGCGTCGCTGCCACCCCCGCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCTGTGCTC
Seq A exon
GTGAGGATGACCCTCTCCCCCCCTCACTCCCCCCAAGGGGCTGCCCCCCGTGCGCCTGCT
Seq C2 exon
GAAATCCCCCGGAAACATCCACCTATCGCCGCCAAAGTTGAGGAGCCCCTCAAGAACCTACCAGAGAAGAAGAAATTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCGTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCGCGAATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACGCCGCCACCCATGCTGAGCCCTGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGTGTGCTGCTGTGCCGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-29-23,30-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTAATCCCACCCAAGCC
R:
GCGATAGGTGGATGTTTCCGG
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types