MmuEX0048818 @ mm10
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47140942-47141909:+
Coord C1 exon
chr17:47140942-47140965
Coord A exon
chr17:47141132-47141404
Coord C2 exon
chr17:47141824-47141909
Length
273 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTCTGTCTCCCCAGCAC
3' ss Score
8.42
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GGAGCTTAGGAACGGTTGCTAGGG
Seq A exon
CACACCCCCTTCCCTCTATGCGATGGCTGAGAGGCGGTGCATGCAGATGGGGAGTAAGTTTCCTGGAGGGGAGGAGGGTGGATGCACGCGCGCAGCCCGGCGCTGCAAATTTCCACCGGGGAGGGAGAGAGTGGCTGGATGCGGAGAGTTTGGAGTTGGAGGGCAAGGAAGGGAGCAGGGCCTGGGGGAGGGGGGAAAGAGGGGTGCTATTGGTGCTGTATCTGGGAGTAAGTTTCCAAGGACGAGAGAGCCTGCACGCTTGCTTGCTAGCTA
Seq C2 exon
CTCGGCTCGCCCCCCATCTCACCCCCCCAAGTGGAGATTGGTCGTCTTGTCGGATTGCCCAGGCACTTGTTGCCGAAACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types