RnoEX0093502 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15877989-15879069:-
Coord C1 exon
chr9:15878969-15879069
Coord A exon
chr9:15878731-15878783
Coord C2 exon
chr9:15877989-15878089
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTCTGTCTCCCCAGCAC
3' ss Score
8.42
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
AGTCGATTTTGCTTGACAGGCGGAAGGAATGCATCCTGGATCTTAAAAAAAAAAAAAAGGCCGACCGAAGGGGGCTTAGGAAAGCGGTTATTTTGCTAAGG
Seq A exon
CACACCCCCTTCCCTCTAAGCGATGGCTGAGAGGCGGTGCATGCAGATGGGGA
Seq C2 exon
CTCGGCTCGTCCCCCATCTCACCCCCCAAGTGGAGATTGGTCGTCTTGTCGGATTGCCCAGGCACTTGTTGCCGAAACAGCCAAGGTAGGCGAAAAGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGATTTTGCTTGACAGGCG
R:
GACGACCAATCTCCACTTGGG
Band lengths:
145-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]