Special

ENSG00000124496 @ hg19

Biotype
protein_coding
Gene Symbol
TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:18273]
Coordinates
chr6:42192963-42419789:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
71.17
46.97
0
Alternative 3'ss
36
chr6:42200631-42200666
-
28.83
46.97
0
Alternative 5'ss
0
NA
-
66.01
70.01
0
Alternative 5'ss
50
chr6:42330685-42330734
-
33.99
70.01
0
Exon Skipping
126
chr6:42217108-42217233
-
5.54
13.79
0
Exon Skipping
49
chr6:42313147-42313195
-
5.49
17.06
0
Exon Skipping
207
chr6:42203943-42204149
-
96.2
19.75
0
Exon Skipping
249
chr6:42231058-42231306
-
60.11
96.5
0
Exon Skipping
385
chr6:42227077-42227461
-
99.14
5.69
1
Intron Retention
8306
chr6:42214283-42222588
-
10.53
48.31
0
Intron Retention
3312
chr6:42200631-42203942
-
15.27
25.38
0
Intron Retention
62247
chr6:42268488-42330734
-
14.52
25.05
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000064043 Trerf1 1-to-1
Mouse mm9 ENSMUSG00000064043 Trerf1 1-to-1
Rat rn6 ENSRNOG00000022598 Trerf1 1-to-1
Cow bosTau6 ENSBTAG00000015321 TRERF1 1-to-1
Chicken galGal4 ENSGALG00000009896 TRERF1 1-to-1
Chicken galGal3 ENSGALG00000009896 TRERF1 1-to-1
Zebrafish danRer10 ENSDARG00000088631 TRERF1 1-to-1