MmuALTA0018794-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47316614-47317921:+
Coord C1 exon
chr17:47316614-47316660
Coord A exon
chr17:47317768-47317770
Coord C2 exon
chr17:47317771-47317921
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
CATGTGGCCCTACCCTTCAGCAG
3' ss Score
5.52
Exon sequences
Seq C1 exon
ATGCACTTACCTGATGGGAGAGCCCAGTCCGGATCCCCGGAATCAAG
Seq A exon
CAG
Seq C2 exon
CGGCCAAACCAAAGGAGTGTTTGGGGAACAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAAAGCCTGCCCGCCCTGAACGGCCACATGCGGTCCCACGGGGGGATGAGGGCGTCCCCCAGCCTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-26-20,26-19,26-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTACCTGATGGGAGAGC
R:
GCATGTCAGCTTGTTCTTGGC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types