GgaEX0014668 @ galGal3
Exon Skipping
Gene
ENSGALG00000009896 | TRERF1
Description
NA
Coordinates
chr3:24032822-24037889:-
Coord C1 exon
chr3:24037739-24037889
Coord A exon
chr3:24036559-24036807
Coord C2 exon
chr3:24032822-24033191
Length
249 bp
Sequences
Splice sites
3' ss Seq
GCCTTTAATTGTCTGTACAGGAT
3' ss Score
8.7
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TGGCCCAAACAGAGAAACACTTCCTGAGAGAGCTGACGGGAAGAACAAGCTAACGTGTTCAGTATGCTTGAAGGAATTTAAGAGTTTGCCTGCTCTGAATGGTCACATGAGGTCTCATGGAGGAGTGAGAACATCTCCTAACTTCAAACAG
Seq A exon
GATGAAGGAGAGAAACCACCACAGCAGCCGCTGCCTAAAGAGGTGGATAGCCTCGCGCCCATCGTCATGCCAGTGTCTGTCCCTGTAAAGCTTCTGTCACCCGAACCCAGCACGCAGCCCTCTGCCAGCACTACCACAGTCAAAGACAAGCCTGCCAACTCTATGTCAGATGATGAGATGCCCGTTCTCGTGAAGATGACTTTCTCTCCACCGTGCAGTCCAAAAGTGGCCAACCCCTGCTCATCCTCT
Seq C2 exon
GAAATTAGCAAAAAACCTCATCCAAATGCTGCAAAATTGGAAGAAAACTTCAAACCATTACCAGACAAGAAGAAGTATCGGCACAGACCTGAACCTCTCTTCATACCTCCTCCTTCCTTCAACTTCAGCACGTCCCACTCTGGTGCCACGCTGTACCAGAGCCAGCTTCGCTCTCCCCGTGTCCTTGGAGACCATTTGCTGGACCGAACACACGAGCTCCCCCCCTACACTCCACCGCCAATGCTTAGTCCTGTTCGGCATGGATCTGGTCTCTTCAGTAGTGTTATCACATCATCTCATAGCACCGCGCACACTCAGCTGCCGCTCACTCCACTGACACCAACTCCACGGGTGCTCCTCTGTCGGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896_CASSETTE2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=0.892 C2=0.734
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=45.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTCTGAATGGTCACAT
R:
CATTGGCGGTGGAGTGTAGG
Band lengths:
307-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]