MmuINT0164871 @ mm9
Intron Retention
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47456301-47460611:+
Coord C1 exon
chr17:47456301-47456627
Coord A exon
chr17:47456628-47460226
Coord C2 exon
chr17:47460227-47460611
Length
3599 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AACTGTTCCTCTCACTCTAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
GAGGAAGGAGAGAAGGCCCCACCGCCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCAGCCACTGCCACCTCCGCCTCCTCCGCCGCCGCCACCGCAGCTCCCTCCTGAGGCAGAGCGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTAATCCCACCCAAGCCCAGCTCTCAGGGGTTCACCAACAGCGTCGCTGCCACCCCCGCGGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCTGTGCTCGTGAGGATGACCCTCTCCCCCCCTCACTCCCCCCAAGGGGCTGCCCCCCGTGCGCCTGCT
Seq A exon
GTGAGTTGCTGCCCTGCCACACCTGCCTGGGGTGGGGACCATTGCTTTGCTTTCCTGGAGATGAGGACAGCTTTTCCAGAGTCGCCGGCCTGAGCGACTTGATGTAGGTCTCCCTCTCAGGTTCTTCAAGCCTCCCTCGACACCTGCAACCACGCCCAACCATTCCATCCTTGTTACTCCTCCGGGCTGATGGTCTCGATCCAGTTCTGAGCATTGATGTGTTCTCATGCCTAAATGTAAATGGCAATCCAGTTGGCAGCCATCAGATATAGCCTTACAGTTACAAGAATGGAAAAAGCTGATAAGCAGCTGTTTCCCCGCCCTGGATCTCCCCTAGAACCTGGGTCTCCCCATATTCAGCTGCCAAAGATGTACCCTTGGGCTGTCTGCCCCTCTGGAAAGTAGACGAATCATCAGCTCAGATGATCTGCCTGGCCGGTAGCATCAGAGATTGTCACAGCCGTTTTAATCCCGGGGGTCTCGGACCCATTACAGTTCCCGCACTAAGCCCCATGAGAGCCAGACCCCTGCCAATCTCAGGAAAGCAAAGCGATTCTTGTTTCTCAGTCCCTGTTAGATTCTCCTTGCCTTCATCACCCTCTCCTCTTCTCTCTGCCTCTTCTGCTCCCTACCCTGGGGAATTAATGACCTCCATGGTTGGCCATACCAGACCTGTCTCTTCCCACGGAGTAGTGTTGGGTCTTCTATGTCCTGACACAATGAGTGCATTCTGGGAGTCTAGGAGCCGTTAAGGGCAGGGCTGAAACATTCAGAAAAAAATAACTGGTTTGGGGTTCTTGTGTGACGTTGAGGCTCAGAAGACGAGAGGCTGAGGGAGCCTCTCCTTATTCTGGCCAGAGGGGACGAGCAACAGACGTTGATAGAATAGCGTATCTGCATACACTCACACACACACACACTCTCACACACACACCTTGCCTGAGGAAGTTGTGTGGTAGGTGTGAGAGGCTCTGCGTCTATCCTGGGACTACACACACCCATCTCATTCAAGACAGTGAGACAAGGTGGGGCTAGGGAGAAACCTATTCATTGGAGGTGGCAAGATGGAAAGACAGATGTCTTCTGCCAAAATGGCTCCTCTTACAAGTTTTCGGCTTTATTTTTTAAAAAAATATTTATTTATTTATTTATTTATTCTTATTTATATGAGTATACTGTACCTGTCTTCACTCACACCAGAAGGGTGTGCAACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGACAGTGCTCTTAACCACTAAGCCATCTCTCCAGCCCCCAGTTTTCAGCTTTATATACACATAAAAGGTCTACTTTGAATTTTGGATCTTGGCTAGTGACATACAACTACACGATATAACCTTCTCTCCTGGTGCTGAGCTATGGCATTAAGCCACTGATTCCAGTCAGCTACTGGATCAGGAGGAGAAAGACTACAGACTGTTTGCCCTGAGTTGCAGATGTAGGATGCTCTGTGGGTGAGGTATATCAACTGCATTTTAAACTTAATTGCTTTGCTTTGCTGTGGGTTATTCCGATTGTAGCTCCACCGTAAATCAGGGTGCACCTGTATACCAGGTGGGTGGGTCCAGCTAGCAAGGCAGTGCGGTGGTGTTTTTACTTAGGAAATCATTATGGGAGTTTTGAGTAGGCTGAGAAGGAAGGGATGACCTTGGTTTTATGCAGGGTAGAGAGACACCATCAGCTGACAGGCAGGCTGAAGTAGAAGCATGCTCAGTGAATGAGGAAAGAATGGGAATCAAGCCCTTGATGTAAAAACAAGTTTAACATCCAGGAAAGAGCTTTAAACTCAAATCTCGGCTCTGGGATAAAGCCAACTAGAAATGTCCCTCTCAGAGTCTCCGATTTCCCCAGAGTGTTGGACTTACCAGTGGCCTTCTCCCTCCCCTGGGAGCAGGAACTTTATAAAATTCAGTATTTTGGCTCTGTCCCCTAGAGTCCATAGTTTAAACACTTCAGATGTGACCCAAGTGTGCCAGTCTGGGTGGTGTGGGCCTCTGGTCCAGGTCGCTCAGAGAGCCTTGCCCAGGAGATAATAAAGCATTATTTAGAGGGAGAAGCCCCAGAAAGAGCCTAAAAAGGGCTTTTGAACTCTGTGTTTGGGCTCCCTGGCAAAGTTGAGGTCACCAAGAACTCCAAATTACTTAAGTGACCTCCTCAGTGACCCAGGGACAGGGGCTTAAAGGTTTCCAGATTTCCTCCGCAGTCAGGGGTGGGGATGGCAAAGAAGCGTTTTCGAAACATTCTCCTCAGCAGCCTCTTGGCTCCTCGGAGGTCTCTTCTGGGCCTCGCTGAGAATCGCCCCTGCTTGAGGAAAGGAGGGAGGCTGGAGGGCACTGGTCTGCGGAGACCCACGTTAGCGCTCCCTCGAGAACCTCCACGGGGAAGCCGGGAGCCCCTCTCCCCCTCCTCCTTCATTTCTACCTCCCCAAGAGTCTCTCCTAAAGGGCTGGGATGGCACCTCGGAAGACCAGGGAGCTGAGGAAGAAGTAGATGGTGGGAGGGGAGAGGCAGAGCCTACACTACCGAAGGCAGGCCGGTGAGAGAGGCCCAAAGCTTAGGGGAGCTGGGGCAGGTCACATGGCCTGGAGGCAGCTGGTCATGTGACCATGGAAGTCTTTCCCATCACCCCTTGCTGCTGTCTTCACTCGCCACTCTGGCACTAGAGCTGCTGGGCACTGCAGCTGTGCCTGGGCACCTCAGAGCCTCTCCTCAGGTATCCCGGCTTGCTGTCACACCCAGCTCTCGGCTTTTCTGGGTTGATGCTGGCCCCCCCACCCTAGTCTGTTTCGTCTGGCTTTGGCATACCCTGCTTCTCTATTTGACGTGCATGTGTGGACTTACTAGTATACGTGTCTCCGTGTGGCAGGTCCCCCAGACGAGGCTGGGTTCCCCGACATAACCTAAACTAGCTCTGCTGAGAGGAAGCAGGAGGAGATGGGGGTGCTACAGAGGAGCCTCAGAGGGGGCGTGACTGGGGAGCGTCACCAGCTCCATCTCCAAGAGAGCCCGTTAAAACCGCCTTGAGGATTGTGGGCCACTGTGCTCCGGCCTCAAGTAACCCTGTAGAGCCGTGGTGACAGCTCGGGGAACCTGTGCTAGGCACGAACCTCTTCCTGCCCCCTCAGCCTTGGGCCTTGCATCCCCGAAGAGATGATTCTGTCCCCTGCTTAGAACATGTGTGATCTATCCCTGCAGGAGCAGTGGGGGAACTAAAGAGCCACTCTGCTGGATTCCACTCAAGACAGATGGAAATGCAGTGATAAGCCAGAGTTTTAATTTATTACTTCTTGAGGAACCACCCAACCCTTCTTAGACCTTCCGGATTTTCTTTGCTAACCAGCCCAAGGCCGATGTGGTGGGAGTGGGAGGGGACGAACAGAAGGGAGGCAGTCTCTCCCCCACCCCCTTAGAATTTTCGGGATCCCTGGCCAAATCTACGGAAAGGGGCCAAGGCAAGGATAGCAGTTCTGTACTTAGAAAGGGAACAATGACTGGGATGTCCTAGTTTGAATCCCAACTGTTCCTCTCACTCTAG
Seq C2 exon
GAAATCCCCCGGAAACATCCACCTATCGCCGCCAAAGTTGAGGAGCCCCTCAAGAACCTACCAGAGAAGAAGAAATTCCGGCACCGGCCTGAGCCCCTCTTCATCCCACCACCGCCTTCGTCCTATACTCCCAACCCCACCTCTTACTCGGGGGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCGCGAATCCTCGGGGACCACCTGCTCCTGGACCCCGCCCACGAACTGCCCCCCTACACGCCGCCACCCATGCTGAGCCCTGTGCGCCAGGGCTCAGGGCTCTTCAGCAATGTCCTCATCTCTGGCCACGGCCCTGGAGTGCACCCCCAGCTGCCCCTCACTCCCCTCACGCCCACGCCACGTGTGCTGCTGTGCCGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-Trerf1:NM_001097623:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: