HsaEX0067035 @ hg38
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:HGNC:17241]
Coordinates
chr17:15642721-15677280:-
Coord C1 exon
chr17:15677176-15677280
Coord A exon
chr17:15651821-15651946
Coord C2 exon
chr17:15642721-15642816
Length
126 bp
Sequences
Splice sites
3' ss Seq
GAATCTTCTGTCCTTTCCAGAGC
3' ss Score
9.66
5' ss Seq
TGAGTACTC
5' ss Score
-6.53
Exon sequences
Seq C1 exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
Seq A exon
AGCAGGCACAGAGACACGTGGTCTTCAGCAGAGCCTATGGGGTTCAGATGATTCACATAAGAATAGAAGTTTCAGGGCTGGACCTGGGGAGGCAGCCTGAGCCTGAGCCGGCTGTCCTGAGCCTGA
Seq C2 exon
GCTGAACTCCAGTGCACCCAGTTAGACTTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCTAACCAAAAGTCTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926_MULTIEX3-4/5=2-5
Average complexity
C3*
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.475 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTCCATTTTCCAAACCTGGT
R:
AGACTTTTGGTTAGCCTGGAGC
Band lengths:
194-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development