HsaEX0067035 @ hg19
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:17241]
Coordinates
chr17:15546035-15580594:-
Coord C1 exon
chr17:15580490-15580594
Coord A exon
chr17:15554405-15555260
Coord C2 exon
chr17:15546035-15546130
Length
856 bp
Sequences
Splice sites
3' ss Seq
GAATCTTCTGTCCTTTCCAGAGC
3' ss Score
9.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
Seq A exon
AGCAGGCACAGAGACACGTGGTCTTCAGCAGAGCCTATGGGGTTCAGATGATTCACATAAGAATAGAAGTTTCAGGGCTGGACCTGGGGAGGCAGCCTGAGCCTGAGCCGGCTGTCCTGAGCCTGAGTACTCTAGCTGCCTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACTTGGGCTGCACAGATCCTGGGCCAAGGGACAGAAGAAAGACAGCCTAGGAGCAGAGCCTCCCAGATGGCTGAGTTGGATCTAATGGCTCCAGGGCCACTGCCCAGGGCCACTGCTCAGCCCCCAGCCCCTCTCAGCCCAGACTCTGGGTCACCCAGCCCAGATTCTGGGTCAGCCAGCCCAGTGGAAGAAGAGGACGTGGGCTCCTCGGAGAAGCTTGGCAGGGAGACGGAGGAACAGGACAGCGACTCTGCAGAGCAGGGGGATCCTGCTGGTGAGGGGAAAGAGGTCCTGTGTGACTTCTGCCTTGATGACACCAGAAGAGTGAAGGCAGTGAAGTCCTGTCTAACCTGCATGGTGAATTACTGTGAAGAGCACTTGCAGCCGCATCAGGTGAACATCAAACTGCAAAGCCACCTGCTGACCGAGCCAGTGAAGGACCACAACTGGCGATACTGCCCTGCCCACCACAGCCCACTGTCTGCCTTCTGCTGCCCTGATCAGCAGTGCATCTGCCAGGACTGTTGCCAGGAGCACAGTGGCCACACCATAGTCTCCCTGGATGCAGCCCGCAGGGACAAGGAG
Seq C2 exon
GCTGAACTCCAGTGCACCCAGTTAGACTTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCTAACCAAAAGTCTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926_MULTIEX2-4/5=2-5
Average complexity
S
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.428 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064319=zf-B_box=WD(100=23.1)
C2:
PF149511=DUF4503=FE(27.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTCCATTTTCCAAACCTGGT
R:
AGAACAGACTTTTGGTTAGCCTGG
Band lengths:
198-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)