HsaEX0067031 @ hg19
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:17241]
Coordinates
chr17:15546035-15580594:-
Coord C1 exon
chr17:15580490-15580594
Coord A exon
chr17:15548040-15548260
Coord C2 exon
chr17:15546035-15546130
Length
221 bp
Sequences
Splice sites
3' ss Seq
GTGTGTATCTGTAATCCCAGCTA
3' ss Score
2.43
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
Seq A exon
CTACTCAGGAGGCTGAGGCAGGAGAATCGCATGAACCCGGGAGGTGGAGGTTGTAGTGAGCCAAGATTGCACCATTGCACTCCAGCCTGGACGACAGTGTGAGACTCCATCTCAAAAAACAAACAAAGAACAACAACAACAACAACAAAAACTTAGGTTTGGTCTCTGCCCCCATTTCCTGGCACCCGACAGCTCTTAGAACCCCCAGACTCTCTGAAGTG
Seq C2 exon
GCTGAACTCCAGTGCACCCAGTTAGACTTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCTAACCAAAAGTCTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926-'6-14,'6-13,11-14
Average complexity
C1
Mappability confidence:
83%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.485 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF149511=DUF4503=FE(27.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTCCATTTTCCAAACCTGGT
R:
ACAGACTTTTGGTTAGCCTGGA
Band lengths:
196-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)