HsaEX0067032 @ hg19
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:17241]
Coordinates
chr17:15546035-15580594:-
Coord C1 exon
chr17:15580490-15580594
Coord A exon
chr17:15562116-15562190
Coord C2 exon
chr17:15546035-15546130
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGGCCATCTTCTTCTTTTAGGAG
3' ss Score
8.11
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
Seq A exon
GAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAG
Seq C2 exon
GCTGAACTCCAGTGCACCCAGTTAGACTTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCTAACCAAAAGTCTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926-'6-14,'6-8,7-14
Average complexity
C2*
Mappability confidence:
92%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF149511=DUF4503=FE(21.4=100)
C2:
PF149511=DUF4503=FE(27.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAACCTGGTATCATCTCCT
R:
TTAGCCTGGAGCCTGGAGATG
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)