HsaEX0067030 @ hg19
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:17241]
Coordinates
chr17:15548040-15581035:-
Coord C1 exon
chr17:15580889-15581035
Coord A exon
chr17:15580490-15580594
Coord C2 exon
chr17:15548040-15548260
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTATCTCTTCAGTAG
3' ss Score
6.81
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
AACCCCATGCAGGTGTTTCAGGGCTTTATGTCATTCAAGGATGTGGCTGTGAACTTCACTAGGAAGAATGGAGAGAACTGGACCTTGCTCAGAGAGTCTTGTACAGGGATGTAATGCTGGAGAACTATAGGAACCTGGTCTCCTTGG
Seq A exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
Seq C2 exon
CTACTCAGGAGGCTGAGGCAGGAGAATCGCATGAACCCGGGAGGTGGAGGTTGTAGTGAGCCAAGATTGCACCATTGCACTCCAGCCTGGACGACAGTGTGAGACTCCATCTCAAAAAACAAACAAAGAACAACAACAACAACAACAAAAACTTAGGTTTGGTCTCTGCCCCCATTTCCTGGCACCCGACAGCTCTTAGAACCCCCAGACTCTCTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926-'5-13,'5-7,6-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=63.2)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGAACTGGACCTTGCT
R:
AAATGGGGGCAGAGACCAAAC
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)