HsaEX0067030 @ hg38
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:HGNC:17241]
Coordinates
chr17:15651091-15680953:-
Coord C1 exon
chr17:15680865-15680953
Coord A exon
chr17:15677176-15677280
Coord C2 exon
chr17:15651091-15651946
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTATCTCTTCAGTAG
3' ss Score
6.81
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TTCTGCCCTCTGAGGACCCTGCCCTTTCCCAAAAGGGGTATCTTAAGAAGGAAAATATGGCTGCTCTTTGCCGGACAGCAGAGTCCCAG
Seq A exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
Seq C2 exon
AGCAGGCACAGAGACACGTGGTCTTCAGCAGAGCCTATGGGGTTCAGATGATTCACATAAGAATAGAAGTTTCAGGGCTGGACCTGGGGAGGCAGCCTGAGCCTGAGCCGGCTGTCCTGAGCCTGAGTACTCTAGCTGCCTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACTTGGGCTGCACAGATCCTGGGCCAAGGGACAGAAGAAAGACAGCCTAGGAGCAGAGCCTCCCAGATGGCTGAGTTGGATCTAATGGCTCCAGGGCCACTGCCCAGGGCCACTGCTCAGCCCCCAGCCCCTCTCAGCCCAGACTCTGGGTCACCCAGCCCAGATTCTGGGTCAGCCAGCCCAGTGGAAGAAGAGGACGTGGGCTCCTCGGAGAAGCTTGGCAGGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926-'10-26,'10-17,14-26
Average complexity
C3
Mappability confidence:
88%=100=82%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064319=zf-B_box=WD(100=23.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000416464fB7303
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGCCGGACAGCAGAG
R:
ACTGTTTCCTCCCTCCCAGAG
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development