HsaINT1045168 @ hg38
Intron Retention
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:HGNC:17241]
Coordinates
chr17:15677176-15680953:-
Coord C1 exon
chr17:15680865-15680953
Coord A exon
chr17:15677281-15680864
Coord C2 exon
chr17:15677176-15677280
Length
3584 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTGTTTGTATCTCTTCAGTAG
3' ss Score
6.81
Exon sequences
Seq C1 exon
TTCTGCCCTCTGAGGACCCTGCCCTTTCCCAAAAGGGGTATCTTAAGAAGGAAAATATGGCTGCTCTTTGCCGGACAGCAGAGTCCCAG
Seq A exon
GTGAGTTGGGGATTTTCCTCTCTTCTTGGAAATTTTATTTTAATTGAGTTGGGGATTTTCCTCTCTTCTCAGAAATCTTATTTTAATTCCTGAAGCAAATTTTTTTTCTCTTAGCATGAAGCTTGTCAACCACATTAGCCACAGCAGTTTGAAAGGAAAGGATCAAGCAGGTGGGATGGACTGCCAATGAGATGGTGTTTGCGTGTTCCTCAGTTGTATGGCAGTAGCAGTGAAGGTCAGGAGGCTTGGTAGCCTCGCCCATCAGTTGGCAGTGTAGAGAAAGGATGGTAGGGGCAGGATGGGAATGAGGCCTCTTTAGCAGATAATTGAGGAGCGTGACTCCTAGAACATGGTTGGGTAAGAATCAAGCTTCTTTTTGTTCACTTGAGACATTTGGCATAGATATGCAAAGGCACGTGAGGCATTTCTTGCTTGCATCTGCTTAGAATATTTTGGGGAGAAAAGATGTACACAAATCTGTGTGGCACAAACCAGCAGATTTATTATTATTAAATAGGGCCTTATTATTAAGGGCCTACTCAATATAAAGTGTCTTAGGGAAAATGCTGTATGGACTTGGAGGAGCAGGAGCAAATGTGTCTGGCTGAGAGAGATTTAGGAAGGTTTTATTCATTCAACTAGCATTTTAAAGTCCTTTTAAGCAGCTCCTAGGCTAATGAAAGTAGTGAGATTTGATGTGGGCCCTGAAAGCTGAGTAAATTCTTGAAAGATTTATAGAAAGTTAGTGACATAAATGACTTAGAATCAAAGCAAGATACTGATTCCTCTGGCACAGGAAAAAAGTCAGTACATTGAAATCACAGAGGTGTTGTTCCACAAAAACTTAAAGGCTTCTTATACTCAAAGTTCTTTCCTAGATATAATTCTCAAGCTTGGCTTATTTCTTTTTTTCTTTTTTTTTTTTTTTGAGACATAGTCTCGCTCTCTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCCGCCTCCCAGGTTCACTCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAGCTTGGCCTATTTCTTAGTTTCTTACTTACCATGTGTCTCTCTCAACTTAACTGAAGATAACCTTAAGGCCGGCTAAACAATAGGCTTGGGTGGGAAGGCCACATCCTTAATCTGACATTTTTTTTACAGGGCTAAATCACTTTGTTTAGTTAACAGGTGTAATGGGCCTTTATTGCTCAAAGCTCTTGTTAGACTTACTTCCCACTGTATGAGATCTAGAAACAGTTTGCTTTTCCAACCACGTGAGGCCTCAGATTTCTGCACTCTATTCTCTTTTGTTTTGGCTTGAAAATTGACACATTGTTTCCTGAACTTAACTCATTCTTTGTTCGCCAGACATATCCAGGAGCATTCTACACAAAGAGCGTTCTGGTGCTTTCCAACCTGTTCTAGAGCCACAGGCCCAGTGAGCATTTGCCCTGGCCTCATAGTTGCTAATTAGTTTGCCAGTGTATATTAAGAGTCTGCATCTGTTGGCTGGATGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCTGAGGTCAGGAGTCTGTGACCAGCCTGGACAACATGGTGAGATCCCGTTTCTACTAAAAATACAAAAAAAAGTAGCTGGGCGTGGTGGCTCACACCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATCGCTTAAACATGGGAGATGGAGGTTGCGGTAAGCCGAGAGCATCGTGGCCACTGCACTCCAGCAACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGGAGAGTCTGCATTTCTCCAGTCGTAAATATTCTTTTCTTTGAAGCTTGCCACCTGACTGTCAATCCAATGCCACCTGTGTATTTGAACTTTTTATTATGATATCTCCCACTTGAAGGTGCTGATTTCTGAATTAGTTTGGGTTGGCTTACTAATAACTGTTGTAACCAATAGACCCAAAATATATATGGCCTTAATACAATAGAAGTGTATTGTTTGCTGTCATAGCCATGTGAGTGGGTATATAGATTGATAGGATGGCCATTCAGGGACCTGAGCTACCTGAAGCTCTAGCCTCTTTACCATATGGCTTCCAAACTCACTCTGGGGCTCATGGCCCTACCAGCCAGTCAGAAGGGGAAAACAGCATGGAGGAACATACGTGAGTCAGGCCTGGAAAGGGCGCACATCACTCCTGCTTGCATTCCATTGGTTAGGATCTCATGGCCAGGTCTAACTACAGGAGGTTGGGAAATGTTTGTATACCTAGAAAGGAGAGGAGGAGGCATATTTTCATGGACAGTTAGCAGCTCGTAGCACTGTTCTCAAACATTTAGGTTATTTAGAACGATTTTGCTATTTTTCTATTGTAAGGTATAAATAGATGTGATTCTTTGTTTATAACTCTCCATATTTCTGATAGTTTTCTTTTTTTTTTTTTGAGACACAGTCTCGTTCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAAGCTTCGCCTCCCGGGTTCACGCCATTCTCCTGCTTCAGCCTCCCGAATAGCTGGGACTACAGGCGCCCACCACCATGCCTGGCTAATTTTTTTTGTATTTATAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCGATAGTTTTCTTATAATTGAGTTCTGTATATAAAATTACTGTAAAACAAAACTATCAAATTATGTCAGAGGGGTATACACATTTTAAGATTTTAAGATTCTTTAATATACGAGTCAATAAAATCTTGTCTTTGACACTGTGAACATAGTTTAATCTATTTCCTCTCCATCCCATCAGTCTCCCCTAAGTATGCCTCATGTAACTTTTTCTTCAGAACCCCATGCAGGTGTTTCAGGGCTTTATGTCATTCAAGGATGTGGCTGTGAACTTCACTAGGAAGAATGGAGAGAACTGGACCTTGCTCAGAGAGTCTTGTACAGGGATGTAATGCTGGAGAACTATAGGAACCTGGTCTCCTTGGGTGAGCTTGGGTCCTTCCACCCCAGATTGACCTTTCAGGATACCTTTGCCTTCTAAAGATTCCCTTGCTTCTATTAGGGAATGGTAACAAATGAGGCTTTGGTTATTTTCCCCCACAGAATCCAGATCAGATCCTTAAACTGTTTCTCACCCTACTTGGGTAGAAATTATTTAATTGCTTTTGACAATTAGTTATTTCGTTTTCTCCTCTCTAAAATGCAACAGAGTGGGACTGAGAATAGAGTGGTCCTTTCTCTTTTGAACTTAAAATTACATTCTGTTTGTATCTCTTCAG
Seq C2 exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926:ENST00000578237:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains