HsaEX0067029 @ hg19
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:17241]
Coordinates
chr17:15580490-15584267:-
Coord C1 exon
chr17:15584179-15584267
Coord A exon
chr17:15580889-15581035
Coord C2 exon
chr17:15580490-15580594
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCATGTAACTTTTTCTTCAGAAC
3' ss Score
7.59
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTCTGCCCTCTGAGGACCCTGCCCTTTCCCAAAAGGGGTATCTTAAGAAGGAAAATATGGCTGCTCTTTGCCGGACAGCAGAGTCCCAG
Seq A exon
AACCCCATGCAGGTGTTTCAGGGCTTTATGTCATTCAAGGATGTGGCTGTGAACTTCACTAGGAAGAATGGAGAGAACTGGACCTTGCTCAGAGAGTCTTGTACAGGGATGTAATGCTGGAGAACTATAGGAACCTGGTCTCCTTGG
Seq C2 exon
TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926-'4-7,'4-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF149511=DUF4503=PU(8.9=45.5)
A:
PF0135222=KRAB=WD(100=63.2)
C2:
NO


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCCTCTGAGGACCCT
R:
GTGTACCGCTGCTTCTTGGC
Band lengths:
194-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)