HsaEX0067782 @ hg19
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130478345-130479703:+
Coord C1 exon
chr9:130478345-130478442
Coord A exon
chr9:130479123-130479295
Coord C2 exon
chr9:130479613-130479703
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCCTTCGGTTCTAGGAT
3' ss Score
11.68
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GGTGATGGTGCCTAGCAACGTCAGGGCCAGGGCCGCGAGGTAGTTGGCAGAGGCCTCGGGGTCCTCCTGGAAGGGGCCTCATGACAGATTCGGACGAG
Seq A exon
GATGCCCTGAAGGTTGACCAGGGCCCCTCACGGGACATCCCAAAGCCATGGGTGATTCCAGCCCCCAAAGGGATCCTGCAGCACATCTTTGGGACCAGCCACGTGTTCCAAAGCATCTGTGATGTAAAACCAAAGGTCACAGGGTTAACAGTGCCCCTCAAAGTCAGGGAATA
Seq C2 exon
CTACTCCAGAGGCCAGCAGTGCTTGGAGCAGGCAGACTGGGAGACAGCTGTGCTGCTCTTCTCCCGCGCACTCCACCTGGACCCACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-'1-4,'1-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(6.0=6.9)
C2:
PF134141=TPR_11=FE(44.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTAGCAACGTCAGGG
R:
CTGTGGGTCCAGGTGGAGTG
Band lengths:
179-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)