MmuEX6100611 @ mm10
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32773982-32775095:-
Coord C1 exon
chr2:32775048-32775095
Coord A exon
chr2:32774391-32774557
Coord C2 exon
chr2:32773982-32774072
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTGGCTTGGTTCCAGGAG
3' ss Score
7.11
5' ss Seq
GTAGTGAGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
ACTCAGAGAACTCCATCTGCCTCTAGCTCTAGAACGGGGTTATTAAAG
Seq A exon
GAGCCTCACAGTGCCCGTTCCCAGAAAACTCCAAAGCTAAAGGTTCCTGAAGCCCCAGAGAAGATCCTGCGACGCATCTTTGGGACCAGTCATGTGTTCTATGTTATGACAGATCCTACAAAACGAAGGATGATAGGATCAACAGTGCCTGCCAAAGTCAGAGAGTA
Seq C2 exon
CTATAACCAAGGCCATCAGTGCCTCCTACAAGAGGACTGGGAGATGTCTGTGCTGTTCTTCTCCCGTGCCCTCCACCTGGACCCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'2-4,'2-2,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(7.4=23.8)
C2:
PF134141=TPR_11=FE(44.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGAGAACTCCATCTGCCT
R:
AGTTTGGGGTCCAGGTGGAG
Band lengths:
138-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types