HsaEX0067828 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166727307-166732742:-
Coord C1 exon
chr2:166732675-166732742
Coord A exon
chr2:166731189-166731342
Coord C2 exon
chr2:166727307-166727530
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTATTTGTTTTGCAGGTT
3' ss Score
10.24
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GATACAAACTGGCATTTAATTACTTAAAAGCAAAAAGATATGTGGATTCAATTGACATATGTCACCAG
Seq A exon
GTTCTTGAAGCACATCCAACTTATCCAAAAATCAGAAAGGATATACTTGATAAGGCCCGTGCGTCTTTAAGACCTTGAAAATAATTTTAACTTAGGTGTTGGTTTAACAGGAAATGAAAGAAATCTAACTTTCAGTTCTTCCTGTTCAAAACAG
Seq C2 exon
GATTTGATTGCCTTATGTGACAAGCCCAAGATCTGTGACAGTTGGAGCTCAAACTAGGCAGTCTTGATTCCAGACTGCTCTGAACTAGTATTTGAAGGAACTAATGAACATGACATGTTAAATGAAAGTTTGGGGACGTACACTCAGGATGGAAGCAGGGGGACACAACAGAAATGAAAGAATTTTCTGTAGATCTGGGATCTGGACACCTGCCCCCCGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'36-38,'36-36,37-38
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(34.4=100)
A:
PF145591=TPR_19=PD(20.3=48.1)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGATATGTGGATTCAATTGA
R:
GCAGGTGTCCAGATCCCAGAT
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)