HsaEX0067828 @ hg38
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165874679-165880799:-
Coord C1 exon
chr2:165880679-165880799
Coord A exon
chr2:165876165-165876232
Coord C2 exon
chr2:165874679-165874832
Length
68 bp
Sequences
Splice sites
3' ss Seq
TATGGTTTTTGTCTTAACAGGAT
3' ss Score
10.46
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TCTTGCTGCAAAGCTTATGAATATATGGGATACATTATGGAAAAAGAGCAAGCATATACAGATGCTGCCTTGAACTATGAGATGGCATGGAAATATAGCAATCGGACAAATCCGGCAGTAG
Seq A exon
GATACAAACTGGCATTTAATTACTTAAAAGCAAAAAGATATGTGGATTCAATTGACATATGTCACCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTATCCAAAAATCAGAAAGGATATACTTGATAAGGCCCGTGCGTCTTTAAGACCTTGAAAATAATTTTAACTTAGGTGTTGGTTTAACAGGAAATGAAAGAAATCTAACTTTCAGTTCTTCCTGTTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'50-55,'50-54,53-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(1.3=2.4),PF145591=TPR_19=PU(42.2=65.9)
A:
PF145591=TPR_19=FE(34.4=100)
C2:
PF145591=TPR_19=PD(20.3=48.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAAAGCTTATGAATATATGGG
R:
CGCACGGGCCTTATCAAGTAT
Band lengths:
181-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development