RnoEX0094652 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52286794-52289341:-
Coord C1 exon
chr3:52289221-52289341
Coord A exon
chr3:52288109-52288176
Coord C2 exon
chr3:52286794-52286871
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTGTCTTAACAGGAT
3' ss Score
11.53
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCCTGCTGCAAAGCTTATGAATATATGGGGTACATTATGGAGAAGGAGCAAGCATACACAGATGCAGCCTTCAACTATGAGATGGCCTGGAAACATAGCAACCAGACAAATCCTGCTGTGG
Seq A exon
GATATAAATTGGCATTTAATTACTTAAAAGCAAAACGATATGTGGATGCAATTGACGTATGTCACCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTACCCCAAAATCCGAAAGGATATACTGGATAAGGCCCGTGCATCGTTAAGACCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'56-55,'56-54,58-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(0.1=0.0),PF145591=TPR_19=PU(43.8=68.3)
A:
PF145591=TPR_19=FE(34.4=100)
C2:
PF145591=TPR_19=PD(18.8=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGCAAAGCTTATGAAT
R:
TGCACGGGCCTTATCCAGTAT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]