GgaEX6042502 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19183030-19185811:+
Coord C1 exon
chr7:19183030-19183150
Coord A exon
chr7:19184768-19184835
Coord C2 exon
chr7:19185734-19185811
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTTTTTACTTGCAGGTT
3' ss Score
12.64
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TCCTGTTGCAAGGCTTATGAATACATGGGATACATAATGGAAAAGGAACAAGCGTATAAAGATGCAGCAATAAATTATGAGATGGCCTGGAGATATGGAAACCAATCAAATCCAACAATAG
Seq A exon
GTTACAAGCTGGCTTTCAATTACCTGAAAGGAAAGAGATATGTTGATGCAATTGCTATTTGTCATAAG
Seq C2 exon
GTCCTTGAAGCACATCCAAACTATCCAAAGATCAGAAAGGAAATACTTGACAAGGCCCGTGCATCATTAAGAGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'44-49,'44-48,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(0.1=0.0),PF134141=TPR_11=PU(56.7=92.7)
A:
PF134141=TPR_11=FE(32.8=100)
C2:
PF134141=TPR_11=PD(7.5=19.2)
Main Skipping Isoform:
ENSGALT00000038446fB13279
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTTGCAAGGCTTATGAA
R:
GCACGGGCCTTGTCAAGTATT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]