DreEX0081911 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50111092-50113742:-
Coord C1 exon
chr9:50113622-50113742
Coord A exon
chr9:50113465-50113532
Coord C2 exon
chr9:50111092-50111359
Length
68 bp
Sequences
Splice sites
3' ss Seq
GCGTCATCTTTGTTTACCAGGCT
3' ss Score
6.82
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCCTGCTGTAAGGCGTATGAGTACATGGGCTACATTATGGAGAAAGAGCAGTCTTTCAGAGATGCTGCTATGAATTATGAAATGGCCTGGAAGTACAGCAATCAAACCAACCCTACGATCG
Seq A exon
GCTACAAGCTTGCCTTCAACTACCTGAAGGCCAAAAGACACGTGGATGCTATAGATGTGTGCCATAAA
Seq C2 exon
GTTTTGGATGCACATCCCAACTATCCACGCATCAGAAAAGACATCTTGGACAAAGCAAGATCAGCTTTAAGATCATGACAGGAAGAGCAGTGGGGTTTGTGTGTGCTGGTGCTCAATCATGATTTCATCTATAAACTCACAAAGAGCATTAATGAGTATCAGTGAAGTTGTGTAAATGGCTACATGCAGTGTTTATTCAGCATTACACATAGTGTGCTATTTTTTATATGTACATATAAGTGAATAAAAATGTACATTTTTCATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'30-32,'30-31,31-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(49.3=80.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTTTCAGAGATGCTGCT
R:
CACACAAACCCCACTGCTCTT
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]