BtaEX6093513 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12514676-12515211:+
Coord C1 exon
chr22:12514676-12514796
Coord A exon
chr22:12514965-12515032
Coord C2 exon
chr22:12515134-12515211
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTACATCTGGACAGGCT
3' ss Score
5.19
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
TCCTGCTGTAAGGCCTACGAGTACATGGGCTTCATCATGGAAAGGGAGCAGTCATACAAGGACGCGGCCGCCAACTACGAGCTGGCCTGGAAGTACAGCCATCACACCAACCCTGCCATCG
Seq A exon
GCTTCAGGCTCGCTTTCAACTACTTGAAAGACAAGAGATTCGTGGAAGCCATTGAAGTCTGCCATGAT
Seq C2 exon
GTCCTCAGGGAGCACCCCAACTACCCTAAAATCAGAGAAGAAATTCTGGAAAAGGCCCAAGGGTCTCTGAGGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477-'29-40,'29-39,31-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGAGTACATGGGCTTC
R:
CAGAGACCCTTGGGCCTTTTC
Band lengths:
178-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]