MmuEX6069854 @ mm10
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119967196-119967793:+
Coord C1 exon
chr9:119967196-119967316
Coord A exon
chr9:119967447-119967514
Coord C2 exon
chr9:119967597-119967793
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCCCCCACCACCAGGTT
3' ss Score
7.94
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCTTGCTGCCGGGCCTATGAGTACATGGGCTTCATCATGGAGAAAGAGCAGTCATACAAGGATGCAGCAACCAACTACGAGCTGGCCTGGAAGTACAGTCATCAGGCCAACCCCGCCATTG
Seq A exon
GTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCATTGAAGTCTGTCACAGC
Seq C2 exon
GTCCTGACGGAGCACCCCAAGTACCCCAAGATCAGGGAGGAGATTTTGGAGAAAGCCCAAGGGTCCTTGAGGCCCTAGCTGTGGCTGGAAGGGGCTTGGGCAGGGAGAAGCATCAGTCTATAGACGACGACGGTTCAGGGGGGGAGTAGGAAGTAAAACCGTGGAGAGGCAAGTGAGAAACGCATACTCTCCCCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'32-47,'32-45,43-47=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGCAGCAACCAACTACG
R:
AGACTGATGCTTCTCCCTGCC
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types