RnoEX0094638 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128655611-128657955:+
Coord C1 exon
chr8:128655611-128655731
Coord A exon
chr8:128655859-128655926
Coord C2 exon
chr8:128656008-128657955
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTACCCTCTGGACAGGTT
3' ss Score
10.08
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCTTGCTGCAGGGCCTATGAGTACATGGGCTTCATCATGGAGAAAGAGCAGTCATACAAGGACGCAGCCACCAACTACGAGCTGGCTTGGAAGTACAGCCATCAGGCCAACCCTGCCATTG
Seq A exon
GTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCATTGAAGTCTGTCACAGC
Seq C2 exon
GTCCTGACGGAGTACCCCAACTACCCCAAGATCAGGGAGGAGATTTTGGAGAAAGCCCAAGGGTCCTTGAGGCCCTAGCTGTGGCTGCAAGGGGCTCCGGACAGTAGAAGCATCAGTCTATGGACGATTCATGGGGAGAGTAGGAAGTGAATCAGTGGAGAAGCAAGTGAGAAATGCATACTCTCTCCATTTCCGTATCGCTTGTGCTTCATTTGGATTCATGCCTCCTGGGGCCCGAGAGCGTCTGGAAGCTTTATGCTTTTTTAAGGCCTAAGAAGTAATTTTGCCTGGAGAAGGAAGACAGCTGGCTTAGCCTGTGCCGGGGATTCCTGGGCCTTACTCAAGGACCCCACATTTGCTCCGGACTCTTGAAGACATGGACCAGAGACCCCGCCCAGCAGAGTGATGGCTAGGAAAGTACCCTATAGCTACTTCGAAGTGCACCCCTCCCCCAGTCTTGTCCCCAGCGTCTCAGAACTAGAGAAGCATGGCCCCTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'32-33,'32-32,33-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCCTATGAGTACATGG
R:
CAAGGACCCTTGGGCTTTCTC
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]