MmuEX6069854 @ mm9
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119876314-119876911:+
Coord C1 exon
chr9:119876314-119876434
Coord A exon
chr9:119876565-119876632
Coord C2 exon
chr9:119876715-119876911
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCCCCCACCACCAGGTT
3' ss Score
7.94
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCTTGCTGCCGGGCCTATGAGTACATGGGCTTCATCATGGAGAAAGAGCAGTCATACAAGGATGCAGCAACCAACTACGAGCTGGCCTGGAAGTACAGTCATCAGGCCAACCCCGCCATTG
Seq A exon
GTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCATTGAAGTCTGTCACAGC
Seq C2 exon
GTCCTGACGGAGCACCCCAAGTACCCCAAGATCAGGGAGGAGATTTTGGAGAAAGCCCAAGGGTCCTTGAGGCCCTAGCTGTGGCTGGAAGGGGCTTGGGCAGGGAGAAGCATCAGTCTATAGACGACGACGGTTCAGGGGGGGAGTAGGAAGTAAAACCGTGGAGAGGCAAGTGAGAAACGCATACTCTCCCCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGCAGCAACCAACTACG
R:
AGACTGATGCTTCTCCCTGCC
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: