HsaEX6055225 @ hg38
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39138267-39138900:+
Coord C1 exon
chr3:39138267-39138387
Coord A exon
chr3:39138556-39138623
Coord C2 exon
chr3:39138711-39138900
Length
68 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCATGTCCCCGGTAGGCT
3' ss Score
6.37
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
TCCTGCTACAAGGCCTATGAGTACATGGGCTTCATCATGGAGAAGGAGCAGTCCTACAAGGATGCAGTCACCAACTACAAACTGGCCTGGAAGTACAGTCATCACGCCAACCCTGCCATTG
Seq A exon
GCTTCAAACTTGCTTTCAACTACCTGAAGGACAAGAAATTTGTGGAGGCCATTGAAATCTGCAACGAT
Seq C2 exon
GTCCTCAGGGAGCACCCCGACTACCCCAAGATCAGGGAGGAAATTTTGGAAAAGGCCCGAAGGTCCCTGAGGCCCTAGCTGGGGTCAAGGGGCCTGGACCAGTAGAAGCCATCAACCTACTGAAGTTGTGTGGAGGGATGGAAAGTGGGTCAGTGGAGAAGGGATTCAGAAAATGACACATTCTTCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-'57-56,'57-55,58-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGTCATCACGCCAACCC
R:
ACTGACCCACTTTCCATCCCT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains