MmuEX0049467 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66184327-66188380:-
Coord C1 exon
chr2:66188260-66188380
Coord A exon
chr2:66186154-66186221
Coord C2 exon
chr2:66184327-66184843
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTGTCTCAACAGGAT
3' ss Score
13.05
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCCTGCTGCAAAGCTTATGAATATATGGGGTACATTATGGAGAAAGAGCAAGCATACACAGATGCGGCCTTCAACTATGAGATGGCATGGAAACATAGCAACCAGACAAATCCTGCAGTGG
Seq A exon
GATACAAATTGGCATTTAATTACCTAAAAGCAAAACGATATGTGGATGCAATTGACGTATGTCACCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTACCCCAAAATCAGAAAGGATATACTTGATAAGGCGCGTGCATCTTTAAGACCTTGAAAATGATTTTTACTGAAGTGTTGGGCAAGAGATGACAGTGGTCCCTCAGCTTTCACAGTCTTTGCAGTTGACACAGGCTCCAGCTGACAGTGTGACAGAAGTGTGTCCTGCCTTCTCCAGCAGAGGCTGCTGCTGTCCGTGGACAACACTGGTCTGTGGCATCCTTGGTGGAGTGGCTGGGTGAGAGCTCATCTTTCTCCCTTCCATTAGGCACAATGGTAGTTCTGTGATAAAGCTTAACTCGTTTCTACAGAGGATATTTTTGTTAAAGTCTGGGTGATATATCTTTTCTGAAGAGTATTAGATTTTCCAACAATTCTATTTAAAGTCTACTGTCATCTGTTAATTTTCTATTATAGTTTGTGATATAATCTCATGTAATTTATGAAAAATGAATACATATTTTAAATGTATATTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(0.1=0.0),PF145591=TPR_19=PU(43.8=68.3)
A:
PF145591=TPR_19=FE(34.4=100)
C2:
PF145591=TPR_19=PD(18.8=46.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACAAATCCTGCAGTGG
R:
GGAGCCTGTGTCAACTGCAAA
Band lengths:
180-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types