BtaEX0038101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30521169-30531188:+
Coord C1 exon
chr2:30521169-30521393
Coord A exon
chr2:30529187-30529254
Coord C2 exon
chr2:30530651-30531188
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGGGGGTTTTGTCTTTACAGGAT
3' ss Score
9.61
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAGGATCATGTTCCAGCACTTTTGGGAATGGCAACAGCTCATATGATCTTGAAACAAACTCCCCGGGCCCGAAATCAGCTGAAGCGGATTGCAAAAATGAACTGGAATCCTATTGATGCTGAGGATTTTGAGAGGAGTTGGCTGCTGCTTGCTGATATTTATATTCAGTCAGCAAAATACGACATGGCTGAGGAACTGATAAAACGGTGCCTGCGGCATAACAGG
Seq A exon
GATACAAACTGGCATTTAATTACTTAAAAGCAAAAAGATATGTGGATGCAATTGACATATGTCACCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTACCCCAAAATCAGAAAGGATATACTTGATAAAGCTCGCACATCTTTAAGACCTTGAAAATTATTTTAACTTTTCAAAGCAAGAAATGGAAAGAATCTGAGTTCTTCCAGTACAAAATAGGTTAAGCTAATACTTTGTATTAGAAAGCATACTTTCTCCAGCAGAGGCTGCTGTTGCATATAAAGAGAAACACTGTGTTAAATGGATGTCTTCTGATGGAGAAAGTGAATGAGCTGGTTTATTTAATTGACTCTCTTGATTAGGTGCAGATTTGGTGTTTCTGTGATAAAGATTATAACCCATTTCTATAAAGAATATTTTGTTAAAATCTAGATAGGTAAGTACCCTGTATCTTTTATAAGGGATATTGTTTCAGGAAATATGTTTAAAATACTATTGGTCTCTGTTAAACATTTTTGTGAAATTCTGTTATTTCAAAGGTTTGAGTAAGTTTCCATGTAAATATTTATAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134321=TPR_16=PD(64.9=49.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGAGGAGTTGGCTGCTG
R:
AGGTCTTAAAGATGTGCGAGCT
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development