HsaEX0068626 @ hg19
Exon Skipping
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68496184-68497489:-
Coord C1 exon
chr4:68497426-68497489
Coord A exon
chr4:68497220-68497294
Coord C2 exon
chr4:68496184-68496253
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCATCCCTGTTCATTTAAGAGT
3' ss Score
6.07
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GTTTATTTTGGCAGTCACCAAAGAGGCCACCCTCTCCAATAAAATTTGATTTAAATGAGCCTTT
Seq A exon
AGTTAACAAGTCATTCTGACCAAGAAAGCCAGCCACAACCCTTCCCACACAAATGTGAATCCATTCATTTACATG
Seq C2 exon
GCACCTCAGTTTCCTTCAGAATGCTGCAAAACTATATGCTACAGTATATTGTATTCCATTTGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-'34-30,'34-29,35-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(12.3=31.8)
A:
NO
C2:
PF0213416=UBACT=FE(40.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCACCAAAGAGGCCACC
R:
TCTGCAAATGGAATACAATATACTGT
Band lengths:
119-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)