HsaEX0068626 @ hg38
Exon Skipping
Gene
ENSG00000033178 | UBA6
Description
ubiquitin like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:67630466-67631771:-
Coord C1 exon
chr4:67631708-67631771
Coord A exon
chr4:67631502-67631576
Coord C2 exon
chr4:67630466-67630535
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCATCCCTGTTCATTTAAGAGT
3' ss Score
6.07
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GTTTATTTTGGCAGTCACCAAAGAGGCCACCCTCTCCAATAAAATTTGATTTAAATGAGCCTTT
Seq A exon
AGTTAACAAGTCATTCTGACCAAGAAAGCCAGCCACAACCCTTCCCACACAAATGTGAATCCATTCATTTACATG
Seq C2 exon
GCACCTCAGTTTCCTTCAGAATGCTGCAAAACTATATGCTACAGTATATTGTATTCCATTTGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000322244fB7458
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCACCAAAGAGGCCACC
R:
TCTGCAAATGGAATACAATATACTGT
Band lengths:
119-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development