HsaEX0069755 @ hg38
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77741617-77759852:-
Coord C1 exon
chr1:77759643-77759852
Coord A exon
chr1:77746399-77746556
Coord C2 exon
chr1:77741617-77741748
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTGTCTATACCAGGCT
3' ss Score
8.46
5' ss Seq
TTGGTTGGT
5' ss Score
2.01
Exon sequences
Seq C1 exon
GGAGACACCGGAAGGAGCCGCGGCTGCTGCGGGAAGTGGCCAGTTCAGGAGGCGGACCCCCCGAGGGCAGCGCTGCGGGGCCGTTTTCCGGCCCTCCTGACGCGACACTGCCCCTCTCCGAGAGCTGAGAAGGAAAAGAGGAGCTTGCGGAGGTGCGGCTGCAGGCCGTTGTTGGTCGAGCTGGCGGGTCCCGCGGGCCAGGCCGTGGAG
Seq A exon
GCTTTGGTGTCAGGATGATGCTGGCTTCATAAAATGAGTTACGGAGGATTCCTTCTTTTTATATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGCTCCTCTTTGTACCTCTGGTAGAATTCGGCTGTGAATCCGTCTGGTCCTGGACTTTTTTTG
Seq C2 exon
GTGTTACCTCATTTTGAAAGTCTTGGGAAACAGGAAAAAATTCCTAACAAAATGTCAGCTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACAAAAGAAGATTTGATACAAAAATCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGCCAGTTCAGGAGG
R:
TGTGGACAATGATTTCGAAAAGCTG
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development