HsaEX0069762 @ hg38
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77741617-77759852:-
Coord C1 exon
chr1:77759643-77759852
Coord A exon
chr1:77745421-77745599
Coord C2 exon
chr1:77741617-77741748
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGGTCAATTTTGTTTACAAGAGC
3' ss Score
2.53
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGAGACACCGGAAGGAGCCGCGGCTGCTGCGGGAAGTGGCCAGTTCAGGAGGCGGACCCCCCGAGGGCAGCGCTGCGGGGCCGTTTTCCGGCCCTCCTGACGCGACACTGCCCCTCTCCGAGAGCTGAGAAGGAAAAGAGGAGCTTGCGGAGGTGCGGCTGCAGGCCGTTGTTGGTCGAGCTGGCGGGTCCCGCGGGCCAGGCCGTGGAG
Seq A exon
AGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAAACATGCCAAATTGTAAAGACCATCGATGTTAGGAAGAAACTGCCTCAACTAATGAGCAAAATAACCAGCTAACATCGTAATGACAGGATCAAATTCACACATAACGATATTAACCTTAAAG
Seq C2 exon
GTGTTACCTCATTTTGAAAGTCTTGGGAAACAGGAAAAAATTCCTAACAAAATGTCAGCTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACAAAAGAAGATTTGATACAAAAATCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGCCAGTTCAGGAGG
R:
TGTGGACAATGATTTCGAAAAGCTG
Band lengths:
258-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development